SBGN Software

This page summarizes what is known about software support for SBGN languages. This knowledge comes from a variety of sources, and is necessarily incomplete. If your software is not listed below, or if you know of another effort, please post a message to sbgn-discuss@sbgn.org.

The following is a list of software packages known to provide (or have started to develop) support for SBGN notations. As the list grow we envision more sophisticated way of recording support, but we hope this will be useful nevertheless.

• Arcadia - Contact: alice . villeger @ manchester . ac . uk
• Athena - Contact: fbergman @ u . washington . edu
• BiNoM - Contact: laurence . calzone @ curie . fr
• BioModels Database - Contact: biomodels-net-team @ lists . sourceforge . net
• BioPAX - Contact: demir @ cbio . mskcc . org
• BioUML - Contact: fedor @ developmentontheedge . com
• ByoDyn
• CellDesigner - Version 4.x supports SBGN Process Diagram Level 1. Contact: info @ celldesigner . org
• Dunnart Contact: Sarah.Boyd @ infotech . monash . edu . au
• Edinburgh Pathway Editor - Contact: asorokin @ inf . ed . ac . uk or Stuart Moodie: smoodie @ ed . ac.uk
• JWS Online - Contact: jls @ sun . ac . za
• Mayday - Contact: battke @ informatik.uni-tuebingen.de
• Netbuilder (Apostrophe) - Contact: k . wegner @ herts . ac . uk
• PANTHER - Contact: mi @ ai . sri . com
• PathwayLab - Contact: mats . jirstrand @ fcc . chalmers . se
• Reactome - Contact: eschmidt @ ebi . ac . uk
• Vanted - Contact: klukas @ ipk-gatersleben . de
• VISIBIOweb - Contact: ugur @ cs . bilkent.edu.tr